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Tutorials

The role of the tutorials is to provide a platform for a more intensive scientific exchange amongst researchers interested in a particular topic and as a meeting point for the community. Tutorials complement the depth-oriented technical sessions by providing participants with broad overviews of emerging fields. A tutorial can be scheduled for 1.5 or 3 hours.

Tutorial proposals are accepted until:

January 17, 2025


If you wish to propose a new Tutorial please kindly fill out and submit this Expression of Interest form.



Tutorial on
Enrich Data Analytics with GenAI


Instructor

Stefan Helfrich
KNIME
Germany
 
Brief Bio
Dr. Stefan Helfrich is responsible for academic relations at KNIME. Before, he worked as a Bioimage Analyst at the University of Konstanz, supporting users of the local light microscopy facility with image and data analysis tasks. Already during that time, he realized that it is crucial to build up the right set of skills for researchers, becoming his major motivation to teach data literacy skills (using KNIME).
Abstract

Learn how to enrich data analytics with GenAI without writing a line of code. During this tutorial, we will explore an outlier detection use case and exploit the multi-language capabilities of GenAI to automatically generate custom alert messages.

You will become familiar with the free low-code tool KNIME Analytics Platform, techniques for outlier detection, and the use of GenAI via the KNIME AI Extension (Labs). We will discuss multiple GenAI services and providers, including OpenAI, GPT4All, Hugging Face, Chroma, FAISS, and more.

Keywords: Data Analytics, Low-Code, GenerativeAI, Outlier Detection, Data Apps

Aims and Learning Objectives:
- Learn how to build workflows with KNIME Analytics Platform
- Detect outliers visually and using statistical techniques - Prompt engineer an LLM via the OpenAI integration
- Create a vector store from a corpus of different types of documents (the knowledge base)
- Build and deploy a data app to display alerts and make it available to users on the web

Target Audience: Users who are interested in low-code tools for data analytics.

Prerequisite Knowledge of Audience: No coding is required. Please bring your laptop with KNIME Analytics Platform and the KNIME AI Extension (Labs) already installed.





















Secretariat Contacts
e-mail: biostec.secretariat@insticc.org

Tutorial on
Advancing Healthcare by Discovering New Biomarkers Using AI Tools and Network Models


Instructor

Hesham Ali
University of Nebraska at Omaha
United States
 
Brief Bio
Hesham H. Ali is a Professor of Computer Science and the director of the University of Nebraska Omaha (UNO) Bioinformatics Core Facility. He served as the Lee and Wilma Seemann Distinguished Dean of the College of Information Science and Technology at UNO between 2006 and 2021. He has published numerous articles in various IT areas, including scheduling, distributed systems, data analytics, wireless networks, and Bioinformatics. He has been serving as the PI or Co-PI of several projects funded by NSF, NIH and Nebraska Research Initiative in the areas of data analytics, wireless networks and Bioinformatics. He has also been leading a Research Group that focuses on developing innovative computational approaches to model complex biomedical systems and analyze big bioinformatics data.
Abstract

The last several years witnessed major advancements in the development of technologies with the goal of collecting various types of data in many application domains. The biomedical domain represents a clear example of such development, since every time the evolving biomedical technologies make it possible for bioscience researchers to have access to new type of biological data, exciting research questions attract new studies: Would it possible for the new data to provide new biological signals or biomarkers to be used for supporting biomedical research and advancing healthcare? Would the biological signals associated with the new data be robust enough to be used for the purpose of early disease diagnosis or the assessment of different treatments for certain health conditions.

This tutorial begins with a brief introduction to biomarkers and how various technologies helped produce biomarkers with major impact on biomedical research and healthcare. We then discuss how recent technologies have made it possible to generate new types of data that can be used to obtain a new generation of biomarkers. We discuss biomarkers obtained from mobile wearable devices, microbiome data, and nanoparticles profiles. We discuss how the exciting new AI tools and network models can leverage the new biomarkers in supporting advanced biomedical research and lead to the next generation of healthcare.

Keywords: Biomarkers, AI tools, network models, mobility data, microbiomes, Extracellular Vesicles, preventive healthcare.

TUTORIAL OBJECTIVES

Biomarkers, or biological signals, play an important role in numerous biomedical studies and in supporting various aspects public health related tasks. A biomarker is a measurable indicator of a biological state or a health condition that can be used to assess health status, disease presence, or track the success level of treatments. Recent advancements in computational approaches, particularly AI-approaches, and the increasing availability of biological data make it possible to further increase opportunities for of obtaining and utilizing biomarkers. The main objectives of this tutorial are:

1-      discuss the impact of recent development in computational technology, including the recent AI outburst, on Biomedical research and healthcare

2-      Familiarize the participants of the various types of biomarkers that have been utilized the last couple of decades and their significant impact on biomedical research.

3-      Introduce the audience to new generation of biomarkers using advanced computational techniques and growing available data with a focus on biomarkers related to mobility parameters, microbiome communities and nanoparticles data.

4-      Highlight several case studies in which the newly developed biomarkers play key roles in reaching new medical discoveries and discuss new directions in biomedical research using innovative application of the new biomarkers.

REQUIREMENTS AND TARGET AUDIENCE

The tutorial is intended primarily for computational scientists interested in AI-rich biomedical informatics, complex networks and data analytics, and their applications in advancing biomedical research. It is also of interest to Biomedical researchers interested in the impact of exploring new informatics approaches to support biomedical studies and public health issues. The main concepts will be introduced in a highly accessible manner. No formal background will be needed.

TUTORIAL DURATION AND FORMAT

The tutorial is designed as a 3-hour tutorial. The material will be presented as an interactive lecture with audience participation. It will use case studies to illustrate the use of AI tools and network models to analyze different types of medical data, obtain new biomedical signals and extract useful health-related information.

 

 






















Secretariat Contacts
e-mail: biostec.secretariat@insticc.org

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