BIOINFORMATICS 2011 - International Conference on Bioinformatics Models, Methods and Algorithms

08:30

Welcome Desk & Registration (08:30 - 09:00)

09:00

09:00 - 10:30 - Room Granada Special Session on Metagenomic Sequence Data Analysis
META

4: AUTOMATIC ANNOTATION OF BACTERIAL COMMUNITY SEQUENCES AND APPLICATION TO INFECTIONS DIAGNOSTIC Victor Solovyev, Asaf Salamov, Igor Seledtsov, Denis Vorobyev and Alexander Bachinsky
8: PROPOSAL FOR OPEN DISCUSSION - Informatics Challenges for Next Generation Sequencing Metagenomics Experiments Folker Meyer and Nikos Kyrpides
2: PREDICTED RELATIVE METABOLOMIC TURNOVER - Predicting Changes in the Environmental Metabolome from the Metagenome Peter E. Larsen, Frank Collart, Folker Meyer and Jack A. Gilbert

10:30

Coffee-Break (10:30 - 10:45)

10:45

10:45 - 11:45 - Room Goya & Miró INFORMATICS-DRIVEN INFECTIOUS DISEASE RESEARCH Keynote Speaker: Bruno Sobral

11:45

11:45 - 12:45 - Room Zurbaran Parallel Session 9

7: MODELING CELL PROLIFERATION ACTIVITY OF HUMAN INTERLEUKIN-3 UPON SINGLE RESIDUE REPLACEMENTS Majid Masso and Iosif I. Vaisman
20: METABOLIC MODELING OF CONVERGING METABOLIC PATHWAYS - Analysis of Non-steady State Stable Isotope-resolve Metabolism of UDP-GlcNAc and UDP-GalNAc Hunter N. B. Moseley, Richard M. Higashi, Teresa W-M. Fan and Andrew N. Lane
51: IMPROVED BREAST CANCER PROGNOSIS BASED ON A HYBRID MARKER SELECTION APPROACH L. Hedjazi, M.-V. Le Lann, T. Kempowsky-Hamon, F. Dalenc and G. Favre

11:45

11:45 - 12:45 - Room Granada Special Session on Metagenomic Sequence Data Analysis
META

11: ANNOTATING UniProt METAGENOMIC AND ENVIRONMENTAL SEQUENCES IN UniMES Samuel Patient and Maria Martin
5: INFRASTRUCTURE FOR METAGENOME DATA MANAGEMENT AND ANALYSIS Tatiana Tatusova

12:45

Lunch (12:45 - 14:00)

14:00

14:00 - 15:40 - Room Zurbaran Parallel Session 10

46: SUBSET SEED EXTENSION TO PROTEIN BLAST Anna Gambin, Sławomir Lasota, Michał Startek, Maciej Sykulski, Laurent Noé and Gregory Kucherov
55: A COMPUTATIONAL STRATEGY TO INVESTIGATE RELEVANT SIMILARITIES BETWEEN VIRUS AND HUMAN PROTEINS - Local High Similarities between Herpes and Human Proteins Anna Marabotti, Corrado Cirielli, Daniela Agnese D’Arcangelo, Claudia Giampietri, Francesco Facchiano, Antonio Facchiano and Angelo M. Facchiano
69: GEOMETRICAL CONSTRAINTS FOR LIGAND POSITIONING Virginio Cantoni, Alessandro Gaggia, Riccardo Gatti and Luca Lombardi
72: RECONFIGURABLE COMPUTING IP CORES FOR MULTIPLE SEQUENCE ALIGNMENT M. Lakka, A. Desarti, G. Chrysos, E. Sotiriades, I. Papaefstathiou and A. Dollas

14:00

14:00 - 15:40 - Room Granada Special Session on Metagenomic Sequence Data Analysis
META

OPEN DISCUSSION: INFORMATICS CHALLENGES FOR NEXT GENERATION SEQUENCING METAGENOMICS EXPERIMENTS

15:40

15:40 - 16:10 - Picasso Foyer Posters Session 3

30: THE MAMDANI CONTROLLER IN PREDICTION OF THE SURVIVAL LENGTH IN ELDERLY GASTRIC PATIENTS Hang Zettervall, Elisabeth Rakus-Andersson and Henrik Forssell
33: OPTIMIZATION OF A SOLID STATE FERMENTATION BASED ON RADIAL BASIS FUNCTION NEURAL NETWORK AND PARTICLE SWARM OPTIMIZATION ALGORITHM Badia Dandach-Bouaoudat, Farouk Yalaoui, Lionel Amodeo and Françoise Entzmann
36: MICROARRAY SYSTEM - A System for Managing Data Produced by DNA-microarray Experiments Alberto Calvi, Pietro Lovato, Simone Marchesini, Barbara Oliboni, Massimo Delledonne and Alberto Ferrarini

15:50

Coffee-Break (15:50 - 16:10)

16:10

16:10 - 17:30 - Room Zurbaran Parallel Session 11

71: TOWARDS FAST 3D NANOPARTICLE LOCALIZATION FOR STUDYING MOLECULAR DYNAMICS IN LIVING CELLS Stefan Sokoll, Klaus Tönnies and Martin Heine
77: A HIGH ACCURACY CT BASED FEM MODEL OF THE LUMBAR SPINE TO DETERMINE ITS BIOMECHANICAL RESPONSE A. Tsouknidas, N. Michailidis, S. Savvakis, K. Anagnostidis, K.-D. Bouzakis and G. Kapetanos
78: MODELING INTERNAL RADIATION THERAPY Egon L. van den Broek and Theo E. Schouten

16:10

16:10 - 17:30 - Room Granada Special Session on Metagenomic Sequence Data Analysis
META

OPEN DISCUSSION: INFORMATICS CHALLENGES FOR NEXT GENERATION SEQUENCING METAGENOMICS EXPERIMENTS

17:30

17:30 - 18:30 - Room Goya & Miró BIOSIGNALS AND INTERFACES Keynote Speaker: Tanja Schultz

19:30

Social Event (19:30 - 23:30)

08:30	Welcome Desk & Registration (08:30 - 09:00)

09:00	09:00 - 10:30 - Room Granada Special Session on Metagenomic Sequence Data Analysis META 4: AUTOMATIC ANNOTATION OF BACTERIAL COMMUNITY SEQUENCES AND APPLICATION TO INFECTIONS DIAGNOSTIC Victor Solovyev, Asaf Salamov, Igor Seledtsov, Denis Vorobyev and Alexander Bachinsky 8: PROPOSAL FOR OPEN DISCUSSION - Informatics Challenges for Next Generation Sequencing Metagenomics Experiments Folker Meyer and Nikos Kyrpides 2: PREDICTED RELATIVE METABOLOMIC TURNOVER - Predicting Changes in the Environmental Metabolome from the Metagenome Peter E. Larsen, Frank Collart, Folker Meyer and Jack A. Gilbert
10:30	Coffee-Break (10:30 - 10:45)
10:45	10:45 - 11:45 - Room Goya & Miró INFORMATICS-DRIVEN INFECTIOUS DISEASE RESEARCH Keynote Speaker: Bruno Sobral
11:45	11:45 - 12:45 - Room Zurbaran Parallel Session 9 7: MODELING CELL PROLIFERATION ACTIVITY OF HUMAN INTERLEUKIN-3 UPON SINGLE RESIDUE REPLACEMENTS Majid Masso and Iosif I. Vaisman 20: METABOLIC MODELING OF CONVERGING METABOLIC PATHWAYS - Analysis of Non-steady State Stable Isotope-resolve Metabolism of UDP-GlcNAc and UDP-GalNAc Hunter N. B. Moseley, Richard M. Higashi, Teresa W-M. Fan and Andrew N. Lane 51: IMPROVED BREAST CANCER PROGNOSIS BASED ON A HYBRID MARKER SELECTION APPROACH L. Hedjazi, M.-V. Le Lann, T. Kempowsky-Hamon, F. Dalenc and G. Favre
11:45	11:45 - 12:45 - Room Granada Special Session on Metagenomic Sequence Data Analysis META 11: ANNOTATING UniProt METAGENOMIC AND ENVIRONMENTAL SEQUENCES IN UniMES Samuel Patient and Maria Martin 5: INFRASTRUCTURE FOR METAGENOME DATA MANAGEMENT AND ANALYSIS Tatiana Tatusova
12:45	Lunch (12:45 - 14:00)
14:00	14:00 - 15:40 - Room Zurbaran Parallel Session 10 46: SUBSET SEED EXTENSION TO PROTEIN BLAST Anna Gambin, Sławomir Lasota, Michał Startek, Maciej Sykulski, Laurent Noé and Gregory Kucherov 55: A COMPUTATIONAL STRATEGY TO INVESTIGATE RELEVANT SIMILARITIES BETWEEN VIRUS AND HUMAN PROTEINS - Local High Similarities between Herpes and Human Proteins Anna Marabotti, Corrado Cirielli, Daniela Agnese D’Arcangelo, Claudia Giampietri, Francesco Facchiano, Antonio Facchiano and Angelo M. Facchiano 69: GEOMETRICAL CONSTRAINTS FOR LIGAND POSITIONING Virginio Cantoni, Alessandro Gaggia, Riccardo Gatti and Luca Lombardi 72: RECONFIGURABLE COMPUTING IP CORES FOR MULTIPLE SEQUENCE ALIGNMENT M. Lakka, A. Desarti, G. Chrysos, E. Sotiriades, I. Papaefstathiou and A. Dollas
14:00	14:00 - 15:40 - Room Granada Special Session on Metagenomic Sequence Data Analysis META OPEN DISCUSSION: INFORMATICS CHALLENGES FOR NEXT GENERATION SEQUENCING METAGENOMICS EXPERIMENTS
15:40	15:40 - 16:10 - Picasso Foyer Posters Session 3 30: THE MAMDANI CONTROLLER IN PREDICTION OF THE SURVIVAL LENGTH IN ELDERLY GASTRIC PATIENTS Hang Zettervall, Elisabeth Rakus-Andersson and Henrik Forssell 33: OPTIMIZATION OF A SOLID STATE FERMENTATION BASED ON RADIAL BASIS FUNCTION NEURAL NETWORK AND PARTICLE SWARM OPTIMIZATION ALGORITHM Badia Dandach-Bouaoudat, Farouk Yalaoui, Lionel Amodeo and Françoise Entzmann 36: MICROARRAY SYSTEM - A System for Managing Data Produced by DNA-microarray Experiments Alberto Calvi, Pietro Lovato, Simone Marchesini, Barbara Oliboni, Massimo Delledonne and Alberto Ferrarini
15:50	Coffee-Break (15:50 - 16:10)
16:10	16:10 - 17:30 - Room Zurbaran Parallel Session 11 71: TOWARDS FAST 3D NANOPARTICLE LOCALIZATION FOR STUDYING MOLECULAR DYNAMICS IN LIVING CELLS Stefan Sokoll, Klaus Tönnies and Martin Heine 77: A HIGH ACCURACY CT BASED FEM MODEL OF THE LUMBAR SPINE TO DETERMINE ITS BIOMECHANICAL RESPONSE A. Tsouknidas, N. Michailidis, S. Savvakis, K. Anagnostidis, K.-D. Bouzakis and G. Kapetanos 78: MODELING INTERNAL RADIATION THERAPY Egon L. van den Broek and Theo E. Schouten
16:10	16:10 - 17:30 - Room Granada Special Session on Metagenomic Sequence Data Analysis META OPEN DISCUSSION: INFORMATICS CHALLENGES FOR NEXT GENERATION SEQUENCING METAGENOMICS EXPERIMENTS
17:30	17:30 - 18:30 - Room Goya & Miró BIOSIGNALS AND INTERFACES Keynote Speaker: Tanja Schultz
19:30	Social Event (19:30 - 23:30)